Archive for December, 2011

Use biomaRt to tranlate HUGO to Entrez gene Ids.

We can use the R package biomaRt to conveniently convert between different types of gene ids. In this example we will convert official HUGO gene names to entrez gene ids.
First we load biomaRt in R using the current ensembl database for human:

See all users jobs in Sun Gridengine

This info is hard to find, but to see what jobs are being run by other users on Sun Gridengine:
qstat -u “*”